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EMBOSS, 2000
EMBOSS, the European Molecular Biology Open Software Suite, implements a number of applications for sequence (DNA or polypeptide) analysis (1). One of those programs, pepstats, includes a calculation of the isoelectric point of a polypeptide. The pK values used in the isoelectric point calculation can be found in the EMBOSS data file Epk.dat.
Amino acid pK values from EMBOSS, 2000 (1).
Group
pK   
CT
3.6
 
ASP
3.9
 
GLU
4.1
 
HIS
6.5
 
NT
8.6
 
CYS
8.5
 
TYR
10.1
 
LYS
10.8
 
ARG
12.5
†  
†  Data from Epk.dat.
References
(1)  Rice P, Longden I and Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite Trends Genet 16:276-7.